PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.004G032500.1
Common NameB456_004G032500, LOC105790241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 226aa    MW: 25090.8 Da    PI: 8.835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.004G032500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.41e-192978255
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        +y+GVr ++ +gr++AeIrdp +   ++r++lg+f++aeeAa+a++aa+  l+g
  Gorai.004G032500.1 29 RYRGVRKRP-WGRFAAEIRDPLK---KTRVWLGTFDSAEEAARAYDAAAITLRG 78
                        69*******.**********743...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.74E-182886No hitNo description
PROSITE profilePS5103224.1312986IPR001471AP2/ERF domain
SMARTSM003806.1E-382992IPR001471AP2/ERF domain
PfamPF008477.3E-142978IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-232987IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-322986IPR001471AP2/ERF domain
PRINTSPR003674.7E-113041IPR001471AP2/ERF domain
PRINTSPR003674.7E-115268IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MRKGRGAAAA ADTAMKPAVE ANGSVKEQRY RGVRKRPWGR FAAEIRDPLK KTRVWLGTFD  60
SAEEAARAYD AAAITLRGNK AKTNFPFNSS DFPAFGIDRH HRRNNEGFIA DGHRLHQTGG  120
DYEDPEVNPQ RPARSSMSST VESFSGPRPT QPPRKPSDFE AVSTRKYHPK MPRTAPEDCR  180
SDCDSSSSVF DNGDDDNVSS SRRKFLPFDL NFPPLDEVDD LTLCL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-212687264ATERF1
3gcc_A4e-212687264ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1164470.0DQ116447.1 Gossypium hirsutum ethylene-responsive element-binding factor (ERF3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012473192.11e-166PREDICTED: ethylene-responsive transcription factor 3-like
SwissprotO803393e-48ERF82_ARATH; Ethylene-responsive transcription factor 3
TrEMBLA0A0D2RSP71e-166A0A0D2RSP7_G
STRINGfgenesh2_kg.1__4150__AT1G50640.12e-51(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20310.11e-38ethylene response factor 7
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]